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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
Boring stuff about me
About me
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Posts
Future Blog Post
Published:
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Blog Post number 4
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 3
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 2
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 1
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
git_repos
publications
Fractional Proliferation
Published in Nature Methods, 2012
A method to deconvolve cell population dynamics from single-cell data.
Recommended citation: Tyson DR, Garbett SP, Frick PL, Quaranta V. Fractional proliferation: a method to deconvolve cell population dynamics from single-cell data. Nat Methods. 2012; 9 923-928. doi:10.1038/nmeth.2138. PubMed PMID: 22886092. PMCID: PMC3459330 https://doi.org/10.1038/nmeth.2138
An unbiased metric of antiproliferative drug effect in vitro
Published in Nature Methods, 2016
We propose the drug-induced proliferation (DIP) rate, the slope of the line on a plot of cell population doublings versus time, as an alternative, time-independent metric
Recommended citation: Harris LA, Frick PL, Garbett SP et al. An unbiased metric of antiproliferative drug effect in vitro. Nat Methods. 2016; 13(6) 497-500. doi:10.1038/nmeth.3852. PubMed PMID: 27135974. PMCID: PMC4887341. https://doi.org/10.1038/nmeth.3852
Quantifying Drug Combination Synergy along Potency and Efficacy Axes
Published in Cell Systems, 2019
This paper describes a quantitative framework and experimental approach for analyzing drug synergy that distinguishes drug efficacy from potency.
Recommended citation: Meyer CT, Wooten DJ, Paudel BB, Bauer J, Hardeman KN, Westover D, Lovly CM, Harris LA, Tyson DR, Quaranta V. Quantifying Drug Combination Synergy along Potency and Efficacy Axes. Cell Syst. 2019; 8(2) 97-108.e16. doi:10.1016/j.cels.2019.01.003. PubMed PMID: 30797775. PMCID: PMC6675406 https://doi.org/10.1016/j.cels.2019.01.003
SCLC Archetypes
Published in Cell Systems, 2022
This paper describes the transcriptomics-defined archetypes found in small cell lung cancer, their enriched/selected phenotypes, and the relationship between the phenotypic heterogeneity and plasticity.
Recommended citation: Groves SM, Ildefonso GV, McAtee CO, Ozawa PMM, Ireland AS, Stauffer PE, Wasdin PT, Huang X, Qiao Y, Lim JS, Bader J, Liu Q, Simmons AJ, Lau KS, Iams WT, Hardin DP, Saff EB, Holmes WR, Tyson DR, Lovly CM, Rathmell JC, Marth G, Sage J, Oliver TG, Weaver AM, Quaranta V. Archetype tasks link intratumoral heterogeneity to plasticity and cancer hallmarks in small cell lung cancer. Cell Syst. 2022; 13(9) 690-710.e17. doi:10.1016/j.cels.2022.07.006. PubMed PMID: 35981544. PMCID: PMC9615940. https://doi.org/10.1016/j.cels.2022.07.006
talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.